Tutorials

Note

We provide explanatory notebooks for FuseMap’s spatial integration and mapping functionalities. Access the example data here: https://drive.google.com/drive/folders/1nMWUzIcmzd4BQztUenwPJdL9zh2gj2Dd?usp=sharing

1. Spatially integrate imaging-based data

2. Spatially integrate imaging-based and sequencing-based data

3. Spatially impute transcriptome-wide genes

4. Map new datasets to existing pre-trained FuseMap model (customized)

5. Map new datasets to the existing pre-trained FuseMap model (molCCF)

6. Infer cell-cell communication/interactions